Stem-loop bra-MIR156c

Accession

MI0030549

Description

Brassica rapa bra-MIR156c precursor miRNA

Literature search

16 open access papers mention bra-MIR156c
(148 sentences)

Sequence

cgcauagaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguucgaugcauuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuccggcu
.((...(((.(((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).)))..)).

Structure

c  aua   a        -    -         a   ---     cuu     g 
 gc   gaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
 ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| u
 cg   cuu GACUGUCU UCUC UCACUCGug guu   uucgu   acgua c
u  -gc   A        A    G         c   cuc     -uu     g 

Annotation confidence Not enough data

Genome context

chrA3: 28490294-28490397 [-]

Mature bra-miR156c-5p

• Accession: MIMAT0035820
• Description: Brassica rapa bra-miR156c-5p mature miRNA
• Sequence: 12 - UGACAGAAGAGAGUGAGCAC - 31
• Evidence: experimental ; Illumina [1]

Mature bra-miR156c-3p

• Accession: MIMAT0035821
• Description: Brassica rapa bra-miR156c-3p mature miRNA
• Sequence: 75 - GCUCACUGCUCUAUCUGUCAGA - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146