Stem-loop bra-MIR156a

Accession

MI0030547

Description

Brassica rapa bra-MIR156a precursor miRNA

Literature search

16 open access papers mention bra-MIR156a
(167 sentences)

Sequence

aagguaaggggaggUGACAGAAGAGAGUGAGCACacaugguggcuuucuugcaugcuuuuuucaauuaggguuucaugcuugaagcuauguguGCUUACUCUCUCUCUGUCACCccuucucucucucu
..((..(((((.(((((((((((((((((((((((((((((....(((..(((((((((........))))...)))))..))))))))))))))))))))))).))))))))).)))))..))....

Structure

--aa  ua     a         -                    ggcu   uu     ---    uuu 
    gg  agggg ggUGACAGA AGAGAGUGAGCACacauggu    uuc  gcaug   cuuu   c
    ||  ||||| ||||||||| ||||||||||||||||||||    |||  |||||   ||||    
    uc  ucuuc CCACUGUCU UCUCUCAUUCGuguguaucg    aag  cguac   ggga   a
ucuc  uc     c         C                    ----   uu     uuu    uua 

Annotation confidence Not enough data

Genome context

chrA2: 2983764-2983891 [+]

Mature bra-miR156a-5p

• Accession: MIMAT0035816
• Description: Brassica rapa bra-miR156a-5p mature miRNA
• Sequence: 15 - UGACAGAAGAGAGUGAGCAC - 34
• Evidence: experimental ; Illumina [1]

Mature bra-miR156a-3p

• Accession: MIMAT0035817
• Description: Brassica rapa bra-miR156a-3p mature miRNA
• Sequence: 94 - GCUUACUCUCUCUCUGUCACC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146