Stem-loop mmu-mir-3552

Accession

MI0030344

Description

Mus musculus mmu-mir-3552 precursor miRNA mir-3552

Gene
family

RF03398; mir-3552

Literature search

1 open access papers mention mmu-mir-3552
(1 sentences)

Sequence

125 reads, 3 reads per million, 13 experiments

ugugaauccagcugguucaAGGCUGCAGGCCCACUUCCCUuggcagauuuuuccauuucagggaguggggaaaguggcccuaaaccaucaaaauggauuauacau
((((((((((..(((((...((((((...((((((.(((((((.........)))....))))))))))....))))))...)))))......)))))).)))).

Structure

-    -      ----gc     caA      -AGG      U    ----   cag 
 ugug aaucca      ugguu   GGCUGC    CCCACU CCCU    ugg   a
 |||| ||||||      |||||   ||||||    |||||| ||||    |||   u
 acau uuaggu      accaa   ccggug    ggguga ggga    acc   u
u    a      aaaacu     auc      aaag      -    cuuu   uuu 

Annotation confidence Not enough data

Genome context

chrX: 146999405-146999509 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-3552

Mature mmu-miR-3552

• Accession: MIMAT0035715
• Description: Mus musculus mmu-miR-3552 mature miRNA
• Sequence: 20 - AGGCUGCAGGCCCACUUCCCU - 40
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379