miRBase entry: cli-mir-2188

Stem-loop cli-mir-2188


Accession
MI0030086
Description
Columba livia cli-mir-2188 precursor miRNA


Sequence

cagaccugugggaAAGGUCCAACCUCACAUGUCCuguauagaauaaagagggAUAUAUGUGGUCAGACCUAUCccacaggccc
....(((((((((.(((((..(((.((.(((((((..............))))))).)).)))..))))).)))))))))...

Structure
caga         A     CA   U  C       guauag 
    ccuguggga AGGUC  ACC CA AUGUCCu      a
    ||||||||| |||||  ||| || |||||||       
    ggacaccCU UCCAG  UGG GU UAUAggg      a
-ccc         A     AC   U  A       agaaau 


Annotation confidence Not enough data
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Genome context
KB375772.1: 1693221-1693303 [-]

Database links

Mature cli-miR-2188-5p

Accession MIMAT0038709
Description Columba livia cli-miR-2188-5p mature miRNA
Sequence 14 - AAGGUCCAACCUCACAUGUCC - 34
Evidence experimental
Illumina [1]

Mature cli-miR-2188-3p

Accession MIMAT0038710
Description Columba livia cli-miR-2188-3p mature miRNA
Sequence 53 - AUAUAUGUGGUCAGACCUAUC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196