miRBase entry: cli-mir-1720

Stem-loop cli-mir-1720


Accession
MI0030075
Description
Columba livia cli-mir-1720 precursor miRNA


Sequence

cugcacuucUGACCACCUCAGCCGUUGCUUUUGugagccucgagagcGAAGCAACGAGAGGCUGGUCUGAaacccccuc
......(((.(((((((((...(((((((((.((...........))))))))))).)))).))))).)))........

Structure
--cugcac   U     -    AGC         U  gagc 
        uuc GACCA CCUC   CGUUGCUUU Gu    c
        ||| ||||| ||||   ||||||||| ||    u
        aAG CUGGU GGAG   GCAACGAAG cg    c
cuccccca   U     C    --A         -  agag 


Annotation confidence Not enough data
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Genome context
KB375424.1: 999045-999123 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-1720
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-1720-5p

Accession MIMAT0038693
Description Columba livia cli-miR-1720-5p mature miRNA
Sequence 10 - UGACCACCUCAGCCGUUGCUUUUG - 33
Evidence experimental
Illumina [1]

Mature cli-miR-1720-3p

Accession MIMAT0038694
Description Columba livia cli-miR-1720-3p mature miRNA
Sequence 48 - GAAGCAACGAGAGGCUGGUCUGA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196