miRBase entry: cli-mir-449b

Stem-loop cli-mir-449b


Accession
MI0030043
Description
Columba livia cli-mir-449b precursor miRNA


Sequence

cugugucugguAGGCAGUGUACUGCUAGCUGGCUGCcguaucuggauggagcAGUCACUCCUGCACUGCCACCugcugcagggcugg
(((((.(.(((.(((((((((.....((.(((((((..(((....)))..)))))))))..)))))))))))).).)))))......

Structure
------     u u   A         CUGCU  C       cg   c 
      cugug c ggu GGCAGUGUA     AG UGGCUGC  uau u
      ||||| | ||| |||||||||     || |||||||  |||  
      gacgu g CCA CCGUCACGU     UC ACUGAcg  gua g
ggucgg     c u   -         ---CC  -       ag   g 


Annotation confidence Not enough data
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Genome context
KB375359.1: 2803297-2803383 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cli-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-449b-5p

Accession MIMAT0038637
Description Columba livia cli-miR-449b-5p mature miRNA
Sequence 12 - AGGCAGUGUACUGCUAGCUGGCUGC - 36
Evidence experimental
Illumina [1]

Mature cli-miR-449b-3p

Accession MIMAT0038638
Description Columba livia cli-miR-449b-3p mature miRNA
Sequence 53 - AGUCACUCCUGCACUGCCACC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196