miRBase entry: cli-mir-365-1

Stem-loop cli-mir-365-1


Accession
MI0030035
Description
Columba livia cli-mir-365-1 precursor miRNA


Sequence

accgcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGuuuccauuacacuaucaUAAUGCCCCUAAAAAUCCUUAuugcucuugcagu
...((((((..((((((((..((((((((((((((((((.......)))).)))....))))))))))).))))))))..))))))...

Structure
acc      aa        AC           ----   -    uu 
   gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUGu  c
   ||||||  ||||||||  |||||||||||    ||| ||||  c
   cguucu  uuAUUCCU  AAAAUCCCCGU    cua caca  a
uga      cg        -A           AAUa   u    uu 


Annotation confidence Not enough data
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Genome context
KB375532.1: 992939-993027 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-365-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-365-5p

Accession MIMAT0038624
Description Columba livia cli-miR-365-5p mature miRNA
Sequence 16 - AGGGACUUUUGGGGGCAGAUGUG - 38
Evidence experimental
Illumina [1]

Mature cli-miR-365-3p

Accession MIMAT0038625
Description Columba livia cli-miR-365-3p mature miRNA
Sequence 56 - UAAUGCCCCUAAAAAUCCUUA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196