miRBase entry: cli-mir-301b

Stem-loop cli-mir-301b


Accession
MI0030027
Description
Columba livia cli-mir-301b precursor miRNA


Sequence

gcugguaucgcuggcUCUGACAAUGUUGCACUACUgucugcacaaauaaagCAGUGCAAUAAUAUUGUCAAAGCauuugguuccaguccu
(((((.((((...(((.(((((((((((((((.((..............)).))))))...))))))))).)))...)))).)))))...

Structure
---     u    cug   C         ---      A  gucugc 
   gcugg aucg   gcU UGACAAUGU   UGCACU CU      a
   ||||| ||||   ||| |||||||||   |||||| ||       
   ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
ucc     u    uua   A         AUA      C  aauaaa 


Annotation confidence Not enough data
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Genome context
KB376592.1: 504205-504294 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-301b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-301b-5p

Accession MIMAT0038613
Description Columba livia cli-miR-301b-5p mature miRNA
Sequence 16 - UCUGACAAUGUUGCACUACU - 35
Evidence experimental
Illumina [1]

Mature cli-miR-301b-3p

Accession MIMAT0038614
Description Columba livia cli-miR-301b-3p mature miRNA
Sequence 52 - CAGUGCAAUAAUAUUGUCAAAGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196