miRBase entry: cli-mir-221

Stem-loop cli-mir-221


Accession
MI0030022
Description
Columba livia cli-mir-221 precursor miRNA


Sequence

uggggcaugaACCUGGCAUACAAUGUAGAUUUcuguguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUccagc
(((.....((((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))))))))..

Structure
--   ggcau          U         AUUU    -    g 
  ugg     gaACCUGGCA ACAAUGUAG    cugu guuu  
  |||     |||||||||| |||||||||    |||| |||| u
  acc     UUUGGGUCGU UGUUACAUC    GAca cgaa  
cg   -----          C         ----    a    u 


Annotation confidence Not enough data
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Genome context
KB375371.1: 1295710-1295786 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-221-5p

Accession MIMAT0038604
Description Columba livia cli-miR-221-5p mature miRNA
Sequence 11 - ACCUGGCAUACAAUGUAGAUUU - 32
Evidence experimental
Illumina [1]

Mature cli-miR-221-3p

Accession MIMAT0038605
Description Columba livia cli-miR-221-3p mature miRNA
Sequence 51 - AGCUACAUUGUCUGCUGGGUUU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196