miRBase entry: cli-mir-217

Stem-loop cli-mir-217


Accession
MI0030019
Description
Columba livia cli-mir-217 precursor miRNA


Sequence

uuugaugucgcagAUACUGCAUCAGGAACUGAUUGgauaauaaucagucaccAUCAGUUCCUAAUGCAUUGCCUucagcaucuaa
...(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).)))))...

Structure
uuu     c c  A  C     C          U -   aau 
   gaugu g ag UA UGCAU AGGAACUGAU G gau   a
   ||||| | || || ||||| |||||||||| | |||    
   cuacg c UC GU ACGUA UCCUUGACUA c cug   a
aau     a u  C  U     A          c a   acu 


Annotation confidence Not enough data
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Genome context
KB375999.1: 133563-133647 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-217-5p

Accession MIMAT0038600
Description Columba livia cli-miR-217-5p mature miRNA
Sequence 14 - AUACUGCAUCAGGAACUGAUUG - 35
Evidence experimental
Illumina [1]

Mature cli-miR-217-3p

Accession MIMAT0038601
Description Columba livia cli-miR-217-3p mature miRNA
Sequence 53 - AUCAGUUCCUAAUGCAUUGCCU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196