miRBase entry: cli-mir-215

Stem-loop cli-mir-215


Accession
MI0030016
Description
Columba livia cli-mir-215 precursor miRNA


Sequence

acugguguccaggaaaAUGACCUAUGAAUUGACAGACUgcuuucuaaacuugCCUGUCAUUUCUAUAGGCCAAUAuucugcacacuuuc
...(((((.(((((...((.((((((((.((((((...((...........)))))))).))).))))).))...))))).)))))...

Structure
acu     c     aaA  A     -   U      ACU  uuuc 
   ggugu cagga   UG CCUAU GAA UGACAG   gc    u
   ||||| |||||   || ||||| ||| ||||||   ||    a
   ucaca gucuu   AC GGAUA CUU ACUGUC   Cg    a
cuu     c     AUA  C     U   U      ---  uuca 


Annotation confidence Not enough data
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Genome context
KB375331.1: 1524393-1524481 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-215-5p

Accession MIMAT0038594
Description Columba livia cli-miR-215-5p mature miRNA
Sequence 17 - AUGACCUAUGAAUUGACAGACU - 38
Evidence experimental
Illumina [1]

Mature cli-miR-215-3p

Accession MIMAT0038595
Description Columba livia cli-miR-215-3p mature miRNA
Sequence 53 - CCUGUCAUUUCUAUAGGCCAAUA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196