miRBase entry: cli-mir-196-1

Stem-loop cli-mir-196-1


Accession
MI0030000
Description
Columba livia cli-mir-196-1 precursor miRNA


Sequence

cucugugaauUAGGUAGUUUCAUGUUGUUGGGcuuuuaauuuuaaacaCAAGAACAUCAAACUACCUGAUuuacucc
....((((((((((((((((.(((((.(((..................))).))))).))))))))))))))))...

Structure
cucu                C     G   GGcuuuua 
    gugaauUAGGUAGUUU AUGUU UUG        a
    |||||||||||||||| ||||| |||         
    cauuUAGUCCAUCAAA UACAA AAC        u
-ccu                C     G   acaaauuu 


Annotation confidence Not enough data
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Genome context
KB375599.1: 1508605-1508681 [+]

Database links

Mature cli-miR-196-5p

Accession MIMAT0038570
Description Columba livia cli-miR-196-5p mature miRNA
Sequence 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
Evidence experimental
Illumina [1]

Mature cli-miR-196-3p

Accession MIMAT0038571
Description Columba livia cli-miR-196-3p mature miRNA
Sequence 49 - CAAGAACAUCAAACUACCUGAU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196