miRBase entry: cli-mir-194

Stem-loop cli-mir-194


Accession
MI0029999
Description
Columba livia cli-mir-194 precursor miRNA


Sequence

caugggcgcucucagaUGUAACAGCAACUCCAUGUGGACuacacugacuuCCAGUGGAGAUGCUGUUACUUUugauagccucuca
...(((.(((.(((((.(((((((((.((((((.((((...........)))))))))).))))))))).))))).))))))...

Structure
cau   c   c     U         A      G    Cuac 
   ggg gcu ucaga GUAACAGCA CUCCAU UGGA    a
   ||| ||| ||||| ||||||||| |||||| ||||    c
   cuc cga aguUU CAUUGUCGU GAGGUG ACCu    u
acu   -   u     U         A      -    ucag 


Annotation confidence Not enough data
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Genome context
KB375331.1: 1524707-1524791 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-194
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-194-5p

Accession MIMAT0038568
Description Columba livia cli-miR-194-5p mature miRNA
Sequence 17 - UGUAACAGCAACUCCAUGUGGAC - 39
Evidence experimental
Illumina [1]

Mature cli-miR-194-3p

Accession MIMAT0038569
Description Columba livia cli-miR-194-3p mature miRNA
Sequence 51 - CCAGUGGAGAUGCUGUUACUUU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196