miRBase entry: cli-mir-193

Stem-loop cli-mir-193


Accession
MI0029998
Description
Columba livia cli-mir-193 precursor miRNA


Sequence

gguuccagaguCGGGGUUUUGGGGGCGAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuuggugguc
....((((((.((((((((((.((((.((.(((((....))).....)).)).)))).)))))))))).)))))).....

Structure
-gguu      u          G    G  A  -----   u 
     ccagag CGGGGUUUUG GGGC AG UG     Agc u
     |||||| |||||||||| |||| || ||     |||  
     gguuuU GCCCUGAAAC CCCG UC Ac     uug a
cuggu      C          A    G  A  cuauu   u 


Annotation confidence Not enough data
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Genome context
KB375532.1: 987719-987798 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-193-5p

Accession MIMAT0038566
Description Columba livia cli-miR-193-5p mature miRNA
Sequence 12 - CGGGGUUUUGGGGGCGAGAUGA - 33
Evidence experimental
Illumina [1]

Mature cli-miR-193-3p

Accession MIMAT0038567
Description Columba livia cli-miR-193-3p mature miRNA
Sequence 49 - AACUGGCCCACAAAGUCCCGCU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196