miRBase entry: cli-mir-148a

Stem-loop cli-mir-148a


Accession
MI0029984
Description
Columba livia cli-mir-148a precursor miRNA


Sequence

ggagccuccggaagcAAAGUUCUGUGACACUCCGACUcuggguacgauagcagUCAGUGCACUACAGAACUUUGUcuccggcggc
...(((.(((((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).))))).)))

Structure
gga   u     a             --A    CC    -   gg 
   gcc ccgga gcAAAGUUCUGUG   CACU  GACU cug  u
   ||| ||||| |||||||||||||   ||||  |||| |||  a
   cgg ggccu UGUUUCAAGACAU   GUGA  CUga gau  c
---   c     c             CAC    --    c   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB376037.1: 533815-533899 [-]

Database links

Mature cli-miR-148a-5p

Accession MIMAT0038542
Description Columba livia cli-miR-148a-5p mature miRNA
Sequence 16 - AAAGUUCUGUGACACUCCGACU - 37
Evidence experimental
Illumina [1]

Mature cli-miR-148a-3p

Accession MIMAT0038543
Description Columba livia cli-miR-148a-3p mature miRNA
Sequence 54 - UCAGUGCACUACAGAACUUUGU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196