miRBase entry: cli-mir-138-2

Stem-loop cli-mir-138-2


Accession
MI0029974
Description
Columba livia cli-mir-138-2 precursor miRNA


Sequence

cccgguauuggugcugcAGCUGGUGUUGUGAAUCAGGCCGacgacaagcgcauccuacuauccgGCUAUUUCACUACACCAGGGUugcaucauaccac
...(((((.(((((.((..(((((((.(((((...(((((......................)))))..))))).))))))).)).))))))))))..

Structure
ccc     u     u  AG       U     UCA     acgacaagcg 
   gguau ggugc gc  CUGGUGU GUGAA   GGCCG          c
   ||||| ||||| ||  ||||||| |||||   |||||           
   ccaua cuacg UG  GACCACA CACUU   UCGgc          a
-ca     -     u  -G       U     -UA     cuaucauccu 


Annotation confidence Not enough data
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Genome context
KB375448.1: 10794987-10795084 [+]

Database links

Mature cli-miR-138-5p

Accession MIMAT0038522
Description Columba livia cli-miR-138-5p mature miRNA
Sequence 18 - AGCUGGUGUUGUGAAUCAGGCCG - 40
Evidence experimental
Illumina [1]

Mature cli-miR-138-2-3p

Accession MIMAT0038524
Description Columba livia cli-miR-138-2-3p mature miRNA
Sequence 65 - GCUAUUUCACUACACCAGGGU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196