miRBase entry: cli-mir-106

Stem-loop cli-mir-106


Accession
MI0029951
Description
Columba livia cli-mir-106 precursor miRNA


Sequence

uugaguugugcAAAAGUGCUUACAGUGCAGGUAGaguuuaggaucuACUGCAGUAUAAGCACUUCUGGcau
.......((((..(((((((((.(.(((((.((((........))))))))).).)))))))))...))))

Structure
uugaguu    -AA         C G     G    guu 
       gugc   AAGUGCUUA A UGCAG UAGa   u
       ||||   ||||||||| | ||||| ||||    
       uacG   UUCACGAAU U ACGUC Aucu   a
-------    GUC         A G     -    agg 


Annotation confidence Not enough data
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Genome context
KB375349.1: 3452467-3452537 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cli-mir-106
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-106-5p

Accession MIMAT0038487
Description Columba livia cli-miR-106-5p mature miRNA
Sequence 12 - AAAAGUGCUUACAGUGCAGGUAG - 34
Evidence experimental
Illumina [1]

Mature cli-miR-106-3p

Accession MIMAT0038488
Description Columba livia cli-miR-106-3p mature miRNA
Sequence 47 - ACUGCAGUAUAAGCACUUCUGG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196