miRBase entry: cli-mir-96

Stem-loop cli-mir-96


Accession
MI0029944
Description
Columba livia cli-mir-96 precursor miRNA


Sequence

ggcccguUUUGGCACUAGCACAUUUUUGCUuugauuuguagcuuuugagCAAUUAUGUGUAGUGCCAAUAUgggagaaggcggaga
..(((((.(((((((((.(((((..((((((.((.........)).))))))..)))))))))))))).)))))............

Structure
----------gg     U         G     UU      u  uuu 
            cccgu UUGGCACUA CACAU  UUGCUu ga   g
            ||||| ||||||||| |||||  |||||| ||   u
            gggUA AACCGUGAU GUGUA  AACgag uu   a
agaggcggaaga     U         -     UU      u  ucg 


Annotation confidence Not enough data
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Genome context
KB375435.1: 1261705-1261790 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-96-5p

Accession MIMAT0038476
Description Columba livia cli-miR-96-5p mature miRNA
Sequence 8 - UUUGGCACUAGCACAUUUUUGCU - 30
Evidence experimental
Illumina [1]

Mature cli-miR-96-3p

Accession MIMAT0038477
Description Columba livia cli-miR-96-3p mature miRNA
Sequence 50 - CAAUUAUGUGUAGUGCCAAUAU - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196