miRBase entry: cli-mir-29a-1

Stem-loop cli-mir-29a-1


Accession
MI0029926
Description
Columba livia cli-mir-29a-1 precursor miRNA


Sequence

aggaugACUGAUUUCUUUUGGUGUUCAGAgucaauaauauuuucUAGCACCAUUUGAAAUCGGUUAuagu
...((((((((((((...(((((((.((((...........)))))))))))...))))))))))))...

Structure
agg            UUU       C    ucaa 
   augACUGAUUUC   UGGUGUU AGAg    u
   ||||||||||||   ||||||| ||||    a
   uAUUGGCUAAAG   ACCACGA Ucuu    a
uga            UUU       -    uuau 


Annotation confidence Not enough data
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Genome context
KB375423.1: 48226-48295 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-29a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-29a-5p

Accession MIMAT0038447
Description Columba livia cli-miR-29a-5p mature miRNA
Sequence 7 - ACUGAUUUCUUUUGGUGUUCAGA - 29
Evidence experimental
Illumina [1]

Mature cli-miR-29a-3p

Accession MIMAT0038448
Description Columba livia cli-miR-29a-3p mature miRNA
Sequence 45 - UAGCACCAUUUGAAAUCGGUUA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196