miRBase entry: cli-mir-27b

Stem-loop cli-mir-27b


Accession
MI0029925
Description
Columba livia cli-mir-27b precursor miRNA


Sequence

gcgaggugcAGAGCUUAGCUGAUUGGUGAACAgugauuguuucccucuuugUUCACAGUGGCUAAGUUCUGCaccugaggag
...(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))......

Structure
---gcg                 G    G       u  uug 
      aggugcAGAGCUUAGCU AUUG UGAACAg ga   u
      ||||||||||||||||| |||| ||||||| ||   u
      uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
gaggag                 -    -       u  ccc 


Annotation confidence Not enough data
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Genome context
KB375520.1: 156995-157076 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-27b-5p

Accession MIMAT0038445
Description Columba livia cli-miR-27b-5p mature miRNA
Sequence 10 - AGAGCUUAGCUGAUUGGUGAACA - 32
Evidence experimental
Illumina [1]

Mature cli-miR-27b-3p

Accession MIMAT0038446
Description Columba livia cli-miR-27b-3p mature miRNA
Sequence 52 - UUCACAGUGGCUAAGUUCUGC - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196