miRBase entry: cli-mir-19a

Stem-loop cli-mir-19a


Accession
MI0029915
Description
Columba livia cli-mir-19a precursor miRNA


Sequence

uuugcagucuucuGUUAGUUUUGCAUAGUUGCACUAcaagaagaguguaguUGUGCAAAUCUAUGCAAAACUGAugguggccuguuau
...((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))...

Structure
uuu    u  u                 --      ---    ag 
   gcag cu cuGUUAGUUUUGCAUAG  UUGCAC   UAca  a
   |||| || |||||||||||||||||  ||||||   ||||  a
   uguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
uau    c  u                 UA      Uug    ga 


Annotation confidence Not enough data
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Genome context
KB375488.1: 2837667-2837754 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cli-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-19a-5p

Accession MIMAT0038427
Description Columba livia cli-miR-19a-5p mature miRNA
Sequence 14 - GUUAGUUUUGCAUAGUUGCACUA - 36
Evidence experimental
Illumina [1]

Mature cli-miR-19a-3p

Accession MIMAT0038428
Description Columba livia cli-miR-19a-3p mature miRNA
Sequence 52 - UGUGCAAAUCUAUGCAAAACUGA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196