miRBase entry: cli-mir-16b

Stem-loop cli-mir-16b


Accession
MI0029911
Description
Columba livia cli-mir-16b precursor miRNA


Sequence

cugucagcagugcucUAGCAGCACGUAAAUACUGGAGUuuaggauugccuguugcucUCCAGUAUUGCAUUGCUGCUUUagugaggcuggaaa
...(((((..((((..(((((((....((((((((((..((((....)))).....))))))))))....)))))))..))))..)))))...

Structure
cug     ag    cU       CGUA          ---Uu    a 
   ucagc  ugcu  AGCAGCA    AAUACUGGAG     uagg u
   |||||  ||||  |||||||    ||||||||||     ||||  
   ggucg  guga  UCGUCGU    UUAUGACCUc     gucc u
aaa     ga    UU       UACG          ucguu    g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB375349.1: 3554281-3554373 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-16b-5p

Accession MIMAT0038419
Description Columba livia cli-miR-16b-5p mature miRNA
Sequence 16 - UAGCAGCACGUAAAUACUGGAGU - 38
Evidence experimental
Illumina [1]

Mature cli-miR-16b-3p

Accession MIMAT0038420
Description Columba livia cli-miR-16b-3p mature miRNA
Sequence 58 - UCCAGUAUUGCAUUGCUGCUUU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196