miRBase entry: cli-mir-1b

Stem-loop cli-mir-1b


Accession
MI0029895
Description
Columba livia cli-mir-1b precursor miRNA


Sequence

ccucccaacccUACAUACUUCUUCAUAUACCCAUauggagucggccggcguuaUGGAAUGUUAAGAAGUAUGUAUUuuugggcugg
((.(((((...((((((((((((.((((..(((((....(((....)))..))))).)))).))))))))))))...)))))..))

Structure
  -u     ccc            C    AC     ugga   g 
cc  cccaa   UACAUACUUCUU AUAU  CCAUa    guc g
||  |||||   |||||||||||| ||||  |||||    |||  
gg  ggguu   AUGUAUGAAGAA UGUA  GGUau    cgg c
  uc     uUU            U    -A     --ug   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB375684.1: 951010-951095 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-1b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-1b-5p

Accession MIMAT0038394
Description Columba livia cli-miR-1b-5p mature miRNA
Sequence 12 - UACAUACUUCUUCAUAUACCCAU - 34
Evidence experimental
Illumina [1]

Mature cli-miR-1b-3p

Accession MIMAT0038395
Description Columba livia cli-miR-1b-3p mature miRNA
Sequence 54 - UGGAAUGUUAAGAAGUAUGUAUU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196