miRBase entry: cli-let-7d

Stem-loop cli-let-7d


Accession
MI0029888
Description
Columba livia cli-let-7d precursor miRNA


Sequence

uaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcucacaaggagguaaCUAUACAACCUGCUGCCUUUCUuagggc
(((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))....

Structure
----     A              C      -------uua      g 
    uagga GAGGUAGUAGGUUG AUAGUU          gggcag g
    ||||| |||||||||||||| ||||||          |||||| a
    auUCU UUCCGUCGUCCAAC UAUCaa          cucguu u
cggg     -              A      uggaggaaca      u 


Annotation confidence Not enough data
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Genome context
KB375849.1: 23611-23697 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-let-7d-5p

Accession MIMAT0038381
Description Columba livia cli-let-7d-5p mature miRNA
Sequence 6 - AGAGGUAGUAGGUUGCAUAGUU - 27
Evidence experimental
Illumina [1]

Mature cli-let-7d-3p

Accession MIMAT0038382
Description Columba livia cli-let-7d-3p mature miRNA
Sequence 60 - CUAUACAACCUGCUGCCUUUCU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196