Stem-loop ami-mir-1805

Accession

MI0029858

Description

Alligator mississippiensis ami-mir-1805 precursor miRNA

Sequence

uggaauauucugggAGUUGUAGUCUUUCAAACAGAgcuuugcaaguacauaccUGUAUUGGAACACUACAGCUCCcugaacuuccuaguguca
.((((..(((.((((((((((((.((((((((((..................)))).)))))).)))))))))))).))).))))........

Structure

-------u    ua   u            C      -    Agcuuugc 
        ggaa  uuc gggAGUUGUAGU UUUCAA ACAG        a
        ||||  ||| |||||||||||| |||||| ||||         
        ccuu  aag cCCUCGACAUCA AAGGUU UGUc        a
acugugau    -c   u            C      A    cauacaug 

Annotation confidence Not enough data

Genome context

AKHW03001628.1: 19192125-19192217 [+]

Mature ami-miR-1805-5p

• Accession: MIMAT0038329
• Description: Alligator mississippiensis ami-miR-1805-5p mature miRNA
• Sequence: 15 - AGUUGUAGUCUUUCAAACAGA - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-1805-3p

• Accession: MIMAT0038330
• Description: Alligator mississippiensis ami-miR-1805-3p mature miRNA
• Sequence: 54 - UGUAUUGGAACACUACAGCUCC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196