Stem-loop ami-mir-1788

Accession

MI0029856

Description

Alligator mississippiensis ami-mir-1788 precursor miRNA

Sequence

gcccgccgcguccugGGCUUGUUUUCAGUUGCCUGCGgguuuauuuggacgacuCAGGCAGCUAAAGCAAGUCUGggacgggugaggaga
.((((((.(((((((((((((((((.(((((((((.(.((((....))))..).)))))))))))))))))))))))))))))).))...

Structure

--g  -    g                 C         C -g    a 
   cc cgcc cguccugGGCUUGUUUU AGUUGCCUG G  guuu u
   || |||| ||||||||||||||||| ||||||||| |  ||||  
   gg gugg gcaggGUCUGAACGAAA UCGACGGAC c  cagg u
aga  a    -                 -         u ag    u 

Annotation confidence Not enough data

Genome context

AKHW03002222.1: 31498-31587 [-]

Mature ami-miR-1788-5p

• Accession: MIMAT0038325
• Description: Alligator mississippiensis ami-miR-1788-5p mature miRNA
• Sequence: 16 - GGCUUGUUUUCAGUUGCCUGCG - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-1788-3p

• Accession: MIMAT0038326
• Description: Alligator mississippiensis ami-miR-1788-3p mature miRNA
• Sequence: 55 - CAGGCAGCUAAAGCAAGUCUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196