Stem-loop ami-mir-365-1

Accession

MI0029818

Description

Alligator mississippiensis ami-mir-365-1 precursor miRNA

Sequence

uuaccgcagggaaaaugAGGGACUUUUGGGGGCAGUUGUGuuuccauuacacuaucaUAAUGCCCCUAAAAAUCCUUAuugcucuugcaguau
.(((.((((((..((((((((..(((((((((((.(((((...............)))))))))))))))).))))))))..)))))).))).

Structure

u   c      aa        AC           G     uuucca 
 uac gcaggg  aaugAGGG  UUUUGGGGGCA UUGUG      u
 ||| ||||||  ||||||||  ||||||||||| |||||      u
 aug cguucu  uuAUUCCU  AAAAUCCCCGU AAUac      a
u   a      cg        -A           -     uaucac 

Annotation confidence Not enough data

Genome context

AKHW03004154.1: 5484149-5484241 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-365-1

Mature ami-miR-365-5p

• Accession: MIMAT0038271
• Description: Alligator mississippiensis ami-miR-365-5p mature miRNA
• Sequence: 18 - AGGGACUUUUGGGGGCAGUUGUG - 40
• Evidence: experimental ; Illumina [1]

Mature ami-miR-365-3p

• Accession: MIMAT0038272
• Description: Alligator mississippiensis ami-miR-365-3p mature miRNA
• Sequence: 58 - UAAUGCCCCUAAAAAUCCUUA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196