Stem-loop ami-mir-338-1

Accession

MI0029816

Description

Alligator mississippiensis ami-mir-338-1 precursor miRNA

Sequence

ccacuugcucccgccuccccAACAAUAUCCUGGUGCUGAGCGaguugcgcacagagacUCCAGCAUCAGUGAUUUUGUUGaggagggcgagcucugcc
......((((.(.(((((.((((((.((((((((((((...(((((.(.....).)))))))))))))).))).)))))).)))))).))))......

Structure

ccacuu    c g     c      U   -         AGC     g g 
      gcuc c ccucc cAACAA AUC CUGGUGCUG   Gaguu c c
      |||| | ||||| |||||| ||| |||||||||   ||||| | a
      cgag g ggagg GUUGUU UAG GACUACGAC   CUcag g c
ccgucu    c -     a      U   U         ---     a a 

Annotation confidence Not enough data

Genome context

AKHW03001221.1: 14501-14598 [-]

Mature ami-miR-338-5p

• Accession: MIMAT0038268
• Description: Alligator mississippiensis ami-miR-338-5p mature miRNA
• Sequence: 21 - AACAAUAUCCUGGUGCUGAGCG - 42
• Evidence: experimental ; Illumina [1]

Mature ami-miR-338-3p

• Accession: MIMAT0038269
• Description: Alligator mississippiensis ami-miR-338-3p mature miRNA
• Sequence: 59 - UCCAGCAUCAGUGAUUUUGUUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196