Stem-loop ami-mir-196-1

Accession

MI0029779

Description

Alligator mississippiensis ami-mir-196-1 precursor miRNA

Sequence

gaacugcuuugugaauUAGGUAGUUUCAUGUUGUUGGgcuuuuauuuuuaaacacaagaacauaaaacuaccugauuuacuccaguuauucucc
.(((((....((((((((((((((((.(((((.(((....((((....))))..))).))))).))))))))))))))))..))))).......

Structure

------g     cuuu                C     G   Ggcu    u 
       aacug    gugaauUAGGUAGUUU AUGUU UUG    uuua u
       |||||    |||||||||||||||| ||||| |||    ||||  
       uugac    cauuuaguccaucaaa uacaa aac    aaau u
ccucuua     --cu                a     g   --ac    u 

Annotation confidence Not enough data

Genome context

AKHW03000817.1: 3471021-3471114 [-]

Mature ami-miR-196-5p

• Accession: MIMAT0038215
• Description: Alligator mississippiensis ami-miR-196-5p mature miRNA
• Sequence: 17 - UAGGUAGUUUCAUGUUGUUGG - 37
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196