Stem-loop ami-mir-194-1

Accession

MI0029777

Description

Alligator mississippiensis ami-mir-194-1 precursor miRNA

Sequence

accagcaguacuuucaaaUGUAACAGCAACUCCAUGUGGacuacgcugacuuCCAGUGGAGAUGCUGUUACUUUugacagccacucacagacau
......(((.((.(((((.(((((((((.((((((.((((...........)))))))))).))))))))).))))).))..))).........

Structure

---accagc   -a  u     U         A      G    cuac 
         agu  cu ucaaa GUAACAGCA CUCCAU UGGa    g
         |||  || ||||| ||||||||| |||||| ||||    c
         uca  ga aguUU CAUUGUCGU GAGGUG ACCu    u
uacagacac   cc  c     U         A      -    ucag 

Annotation confidence Not enough data

Genome context

AKHW03001146.1: 13837746-13837839 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-194-1

Mature ami-miR-194-5p

• Accession: MIMAT0038212
• Description: Alligator mississippiensis ami-miR-194-5p mature miRNA
• Sequence: 19 - UGUAACAGCAACUCCAUGUGG - 39
• Evidence: experimental ; Illumina [1]

Mature ami-miR-194-3p

• Accession: MIMAT0038213
• Description: Alligator mississippiensis ami-miR-194-3p mature miRNA
• Sequence: 53 - CCAGUGGAGAUGCUGUUACUUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196