Stem-loop ami-mir-135-1

Accession

MI0029737

Description

Alligator mississippiensis ami-mir-135-1 precursor miRNA

Sequence

ucccacuguguuaUAUGGCUUUUUAUUCCUAUGUGauuauacuacuccuuucAUAUAGGGAUUGAAGCCGUGCaauacgcugggg
.((((.((((((.(((((((((..((((((((((((..............)))))))))))).))))))))).)))))).)))).

Structure

u    c      a         UU            uuauac 
 ccca uguguu UAUGGCUUU  AUUCCUAUGUGa      u
 |||| |||||| |||||||||  ||||||||||||       
 gggu gcauaa GUGCCGAAG  UAGGGAUAUAcu      a
g    c      C         -U            uuccuc 

Annotation confidence Not enough data

Genome context

AKHW03006215.1: 3671040-3671124 [+]

Mature ami-miR-135-5p

• Accession: MIMAT0038149
• Description: Alligator mississippiensis ami-miR-135-5p mature miRNA
• Sequence: 14 - UAUGGCUUUUUAUUCCUAUGUG - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-135-3p

• Accession: MIMAT0038150
• Description: Alligator mississippiensis ami-miR-135-3p mature miRNA
• Sequence: 53 - AUAUAGGGAUUGAAGCCGUGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196