Stem-loop ami-mir-33-1

Accession

MI0029698

Description

Alligator mississippiensis ami-mir-33-1 precursor miRNA

Sequence

gggugaccgcuguaGUGCAUUGUAGUUGCAUUGCAuguucugguaguaucugugCAAUGUUUCUGCAGUGCAGUAuagaggcacucu
(((((.((.(((((.((((((((((..(((((((((...............)))))))))..)))))))))).))))).))))))).

Structure

-     a  g     G          UU         guucug 
 gggug cc cugua UGCAUUGUAG  GCAUUGCAu      g
 ||||| || ||||| ||||||||||  |||||||||      u
 cucac gg gauAU ACGUGACGUC  UGUAACgug      a
u     -  a     G          UU         ucuaug 

Annotation confidence Not enough data

Genome context

AKHW03002956.1: 945267-945353 [-]

Mature ami-miR-33-5p

• Accession: MIMAT0038092
• Description: Alligator mississippiensis ami-miR-33-5p mature miRNA
• Sequence: 15 - GUGCAUUGUAGUUGCAUUGCA - 35
• Evidence: experimental ; Illumina [1]

Mature ami-miR-33-3p

• Accession: MIMAT0038093
• Description: Alligator mississippiensis ami-miR-33-3p mature miRNA
• Sequence: 55 - CAAUGUUUCUGCAGUGCAGUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196