Stem-loop ami-mir-30c-1

Accession

MI0029692

Description

Alligator mississippiensis ami-mir-30c-1 precursor miRNA

Sequence

aucuaccaugccguagcaugUGUAAACAUCCUACACUCUCAGCugugaacucaagguggcUGGGAGAGGGUUGUUUACGCCuucugccauggucug
....((((((..((((...(((((((((.(((...(((((((((....(((...)))))))))))).))).)))))))))...))))))))))...

Structure

aucu      cc    cau         U   ACA         guga   c 
    accaug  guag   gUGUAAACA CCU   CUCUCAGCu    acu  
    ||||||  ||||   ||||||||| |||   |||||||||    ||| a
    ugguac  cguc   CGCAUUUGU GGG   GAGGGUcgg    ugg  
-guc      --    uuC         U   --A         ----   a 

Annotation confidence Not enough data

Genome context

AKHW03000257.1: 131832-131927 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-30c-1

Mature ami-miR-30c-5p

• Accession: MIMAT0038081
• Description: Alligator mississippiensis ami-miR-30c-5p mature miRNA
• Sequence: 21 - UGUAAACAUCCUACACUCUCAGC - 43
• Evidence: experimental ; Illumina [1]

Mature ami-miR-30c-3p

• Accession: MIMAT0038082
• Description: Alligator mississippiensis ami-miR-30c-3p mature miRNA
• Sequence: 61 - UGGGAGAGGGUUGUUUACGCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196