Stem-loop ami-mir-29a-1

Accession

MI0029686

Description

Alligator mississippiensis ami-mir-29a-1 precursor miRNA

Sequence

cccuuuagaggaugACUGAUUUCUUUUGGUGUUCAGAguccauacuauuuucUAGCACCAUUUGAAAUCGGUUAuagugauuggggaa
((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......))))..

Structure

--    uuagagg            UUU       C    ucca 
  cccu       augACUGAUUUC   UGGUGUU AGAg    u
  ||||       ||||||||||||   ||||||| ||||    a
  gggg       uAUUGGCUAAAG   ACCACGA Ucuu    c
aa    uuaguga            UUU       -    uuau 

Annotation confidence Not enough data

Genome context

AKHW03002440.1: 24295642-24295729 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-29a-1

Mature ami-miR-29a-5p

• Accession: MIMAT0038071
• Description: Alligator mississippiensis ami-miR-29a-5p mature miRNA
• Sequence: 15 - ACUGAUUUCUUUUGGUGUUCAGA - 37
• Evidence: experimental ; Illumina [1]

Mature ami-miR-29a-3p

• Accession: MIMAT0038072
• Description: Alligator mississippiensis ami-miR-29a-3p mature miRNA
• Sequence: 53 - UAGCACCAUUUGAAAUCGGUUA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196