Stem-loop ami-mir-21

Accession

MI0029677

Description

Alligator mississippiensis ami-mir-21 precursor miRNA

Sequence

ccauccugucggaUAGCUUAUCAGACUGAUGUUGACuguuggaugucauggCAACAACAGUCGGUAGGCUGUCugacauuuu
......((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))....

Structure

ccaucc                A     A     A    ugg 
      ugucggaUAGCUUAUC GACUG UGUUG Cugu   a
      |||||||||||||||| ||||| ||||| ||||    
      acaguCUGUCGGAUGG CUGAC ACAAC ggua   u
--uuuu                -     A     -    cug 

Annotation confidence Not enough data

Genome context

AKHW03004004.1: 13769088-13769169 [-]

Mature ami-miR-21-5p

• Accession: MIMAT0038056
• Description: Alligator mississippiensis ami-miR-21-5p mature miRNA
• Sequence: 14 - UAGCUUAUCAGACUGAUGUUGAC - 36
• Evidence: experimental ; Illumina [1]

Mature ami-miR-21-3p

• Accession: MIMAT0038057
• Description: Alligator mississippiensis ami-miR-21-3p mature miRNA
• Sequence: 52 - CAACAACAGUCGGUAGGCUGUC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196