Stem-loop ami-mir-10c

Accession

MI0029665

Description

Alligator mississippiensis ami-mir-10c precursor miRNA

Sequence

cacagucgccuauauguACCCUGUAGAAUCGAAUUUGUGugaacauuucagagucACAAAUUCGUCUCUAGGGGAAuauauggacgaugc
....((((.((((((((.((((.((((..((((((((((((((...))))....))))))))))..)))))))).)))))))).))))..

Structure

caca    c        A    G    AU          ----    c 
    gucg cuauaugu CCCU UAGA  CGAAUUUGUG    ugaa  
    |||| |||||||| |||| ||||  ||||||||||    |||| a
    uagc gguauauA GGGG AUCU  GCUUAAACAc    acuu  
--cg    a        A    -    CU          ugag    u 

Annotation confidence Not enough data

Genome context

AKHW03000840.1: 346301-346390 [+]

Mature ami-miR-10c-5p

• Accession: MIMAT0038034
• Description: Alligator mississippiensis ami-miR-10c-5p mature miRNA
• Sequence: 18 - ACCCUGUAGAAUCGAAUUUGUG - 39
• Evidence: experimental ; Illumina [1]

Mature ami-miR-10c-3p

• Accession: MIMAT0038035
• Description: Alligator mississippiensis ami-miR-10c-3p mature miRNA
• Sequence: 56 - ACAAAUUCGUCUCUAGGGGAA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196