Stem-loop ami-mir-7a-1

Accession

MI0029655

Description

Alligator mississippiensis ami-mir-7a-1 precursor miRNA

Sequence

uggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUuuuuagauaacuaaaucgacAACAAAUCGCAGUCUGCCAUAUggcacagacca
((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).))))))))

Structure

      a  u        A     A       U      --     a 
uggucu gu cugugUGG AGACU GUGAUUU GUUGUu  uuuag u
|||||| || |||||||| ||||| ||||||| ||||||  |||||  
accaga ca ggUAUACC UCUGA CGCUAAA CAAcag  aaauc a
      -  c        G     -       -      cu     a 

Annotation confidence Not enough data

Genome context

AKHW03006358.1: 19475557-19475647 [+]

Mature ami-miR-7a-5p

• Accession: MIMAT0038023
• Description: Alligator mississippiensis ami-miR-7a-5p mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-7a-3p

• Accession: MIMAT0038024
• Description: Alligator mississippiensis ami-miR-7a-3p mature miRNA
• Sequence: 59 - AACAAAUCGCAGUCUGCCAUAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196