Stem-loop cpi-mir-1641

Accession

MI0029592

Description

Chrysemys picta cpi-mir-1641 precursor miRNA

Sequence

agggcauuuccUGGGGAUUAAUGACUGUCUGGGgucaucaucuccucccaguuaguuauuagucccccaggaaauacugugugccuu
.((((((((((((((((((((((((((.((((((...........)))))).))))))))))).))))))))).......)))))).

Structure

a      -------         -           U      ucau 
 gggcau       uuccUGGGG AUUAAUGACUG CUGGGg    c
 ||||||       ||||||||| ||||||||||| ||||||    a
 uccgug       aaggacccc ugauuauugau gacccu    u
u      ugucaua         c           u      ccuc 

Annotation confidence Not enough data

Genome context

chr3: 3228974-3229060 [-]

Mature cpi-miR-1641-5p

• Accession: MIMAT0037917
• Description: Chrysemys picta cpi-miR-1641-5p mature miRNA
• Sequence: 12 - UGGGGAUUAAUGACUGUCUGGG - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196