Stem-loop cpi-mir-456

Accession

MI0029573

Description

Chrysemys picta cpi-mir-456 precursor miRNA

Sequence

uguaugugugagcaggcaucuuuucagccuacauguggauuccuaaaucugCAGGCUGGUUAGAUGGUUGUCauacguucaucug
((.((((((((.(((.(((((..(((((((....(((((((....))))))))))))))..))))).))))))))))).))....

Structure

----  u        g   g     uu       acau       c 
    ug auguguga cag caucu  ucagccu    guggauu c
    || |||||||| ||| |||||  |||||||    |||||||  
    ac ugcauaCU GUU GUAGA  GGUCGGA    Cgucuaa u
gucu  u        -   G     UU       ----       a 

Annotation confidence Not enough data

Genome context

chr3: 16069409-16069493 [+]

Mature cpi-miR-456-3p

• Accession: MIMAT0037889
• Description: Chrysemys picta cpi-miR-456-3p mature miRNA
• Sequence: 52 - CAGGCUGGUUAGAUGGUUGUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196