Stem-loop cpi-mir-148a

Accession

MI0029493

Description

Chrysemys picta cpi-mir-148a precursor miRNA

Sequence

gauuuagucucuugaagcAAAGUUCUGUGACACUCAGACUcugauuaugauagaagUCAGUGCACUACAGAACUUUGUcuuugggggcuguagcag
(...((((((((.((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).)).))))))))...)..

Structure

-- auu        u  a             --A    CA    -   au 
  g   uagucucu ga gcAAAGUUCUGUG   CACU  GACU cug  u
  |   |||||||| || |||||||||||||   ||||  |||| |||  a
  c   gucggggg uu UGUUUCAAGACAU   GUGA  CUga gau  u
ga gau        u  c             CAC    --    a   ag 

Annotation confidence Low

Genome context

chr2: 11448224-11448319 [-]

Mature cpi-miR-148a-5p

• Accession: MIMAT0037782
• Description: Chrysemys picta cpi-miR-148a-5p mature miRNA
• Sequence: 19 - AAAGUUCUGUGACACUCAGACU - 40
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-148a-3p

• Accession: MIMAT0037783
• Description: Chrysemys picta cpi-miR-148a-3p mature miRNA
• Sequence: 57 - UCAGUGCACUACAGAACUUUGU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196