Stem-loop cpi-mir-135-3

Accession

MI0029478

Description

Chrysemys picta cpi-mir-135-3 precursor miRNA

Sequence

gcccucugcuguggucUAUGGCUUUUUAUUCCUAUGUGauugcguuuccuaacucAUGUAGGGCUAAAAGCCAUGGGcuacacagaggaca
..((((((.(((((((((((((((((...((((((((((....(((....)))))))))))))..)))))))))))))))))))))))...

Structure

-gc      c                 UAU          uugc   u 
   ccucug uguggucUAUGGCUUUU   UCCUAUGUGa    guu c
   |||||| |||||||||||||||||   ||||||||||    |||  
   ggagac acaucGGGUACCGAAAA   GGGAUGUAcu    caa c
aca      -                 -UC          ----   u 

Annotation confidence Not enough data

Genome context

KK083035.1: 1088889-1088979 [-]

Mature cpi-miR-135-5p

• Accession: MIMAT0037754
• Description: Chrysemys picta cpi-miR-135-5p mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUG - 38
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-135-3-3p

• Accession: MIMAT0037757
• Description: Chrysemys picta cpi-miR-135-3-3p mature miRNA
• Sequence: 56 - AUGUAGGGCUAAAAGCCAUGGG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196