Stem-loop cpi-mir-1b

Accession

MI0029386

Description

Chrysemys picta cpi-mir-1b precursor miRNA

Sequence

agccccucccucccaacccuaCAUACUUCUUCAUAUGCCCAUAgggagucagccggcguuaUGGAAUGUUAAGAAGUAUGUAUccuugggcuggggucc
.(((((.....(((((...((((((((((((.((((..((((((...(((....))).)))))).)))).))))))))))))...)))))..)))))..

Structure

-a     ucccu     ccc            C    GC      gga   a 
  gcccc     cccaa   uaCAUACUUCUU AUAU  CCAUAg   guc g
  |||||     |||||   |||||||||||| ||||  ||||||   |||  
  ugggg     ggguu   AUGUAUGAAGAA UGUA  GGUauu   cgg c
cc     ---uc     ccU            U    -A      --g   c 

Annotation confidence Not enough data

Genome context

chr19: 4210814-4210912 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpi-mir-1b

Mature cpi-miR-1b-5p

• Accession: MIMAT0037615
• Description: Chrysemys picta cpi-miR-1b-5p mature miRNA
• Sequence: 22 - CAUACUUCUUCAUAUGCCCAUA - 43
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1b-3p

• Accession: MIMAT0037616
• Description: Chrysemys picta cpi-miR-1b-3p mature miRNA
• Sequence: 62 - UGGAAUGUUAAGAAGUAUGUAU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196