Stem-loop aca-mir-5396b

Accession

MI0029362

Description

Anolis carolinensis aca-mir-5396b precursor miRNA

Sequence

gcccagaauggggcauCCACACAACCAGCAAGAAGGAAauaagauuaaucccuuUCUUCUUGCUGUUUGUGCAGGUgccucauccugaca
...(((.((((((((((..(((((.(((((((((((((..............))))))))))))).)))))..)))))))))).)))...

Structure

gcc   a          CA     C             auaaga 
   cag auggggcauC  CACAA CAGCAAGAAGGAA      u
   ||| ||||||||||  ||||| |||||||||||||       
   guc uacuccgUGG  GUGUU GUCGUUCUUCUuu      u
aca   c          AC     U             cccuaa 

Annotation confidence Not enough data

Genome context

chr1: 213792650-213792739 [-]

Mature aca-miR-5396b-5p

• Accession: MIMAT0037580
• Description: Anolis carolinensis aca-miR-5396b-5p mature miRNA
• Sequence: 17 - CCACACAACCAGCAAGAAGGAA - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-5396b-3p

• Accession: MIMAT0037581
• Description: Anolis carolinensis aca-miR-5396b-3p mature miRNA
• Sequence: 55 - UCUUCUUGCUGUUUGUGCAGGU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196