Stem-loop gga-mir-182

Accession

MI0029339

Description

Gallus gallus gga-mir-182 precursor miRNA

Literature search

5 open access papers mention gga-mir-182
(43 sentences)

Sequence

13429 reads, 169 reads per million, 5 experiments

ggcugcuUUUGGCAAUGGUAGAACUCACACUGgugcgcucgcaggauccggUGGUUCUAGACUUGCCAACuacagccccggg
(((((...(((((((...((((((...((((((..(........)..))))))))))))...)))))))...))))).....

Structure

-----     cuU       UGG      UCA      ug gcu 
     ggcug   UUGGCAA   UAGAAC   CACUGg  c   c
     |||||   |||||||   ||||||   ||||||  |    
     ccgac   AACCGUU   AUCUUG   GUggcc  g   g
gggcc     auC       CAG      ---      ua gac 

Annotation confidence Not enough data

Genome context

chr1: 843232-843313 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-182

Mature gga-miR-182-5p

• Accession: MIMAT0037544
• Description: Gallus gallus gga-miR-182-5p mature miRNA
• Sequence: 8 - UUUGGCAAUGGUAGAACUCACACUG - 32
• Evidence: experimental ; Illumina [2]

Mature gga-miR-182-3p

• Accession: MIMAT0037545
• Description: Gallus gallus gga-miR-182-3p mature miRNA
• Sequence: 52 - UGGUUCUAGACUUGCCAAC - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973