Stem-loop gga-mir-96

Accession

MI0029336

Description

Gallus gallus gga-mir-96 precursor miRNA

Literature search

6 open access papers mention gga-mir-96
(45 sentences)

Sequence

437 reads, 6 reads per million, 5 experiments

ggcccgcuUUGGCACUAGCACAUUUUUGCUuugcuuuauguguuuugagCAAUUAUGUGUAGUGCCAAUAUgggagaaggcggaga
..((((..(((((((((.(((((..((((((.((.......))...))))))..))))))))))))))..))))............

Structure

----------gg    cu         G     UU      --u  uu 
            cccg  UUGGCACUA CACAU  UUGCUu   gc  u
            ||||  ||||||||| |||||  ||||||   ||  a
            gggU  AACCGUGAU GUGUA  AACgag   ug  u
agaggcggaaga    AU         -     UU      uuu  ug 

Annotation confidence Not enough data

Genome context

chr1: 844251-844336 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-96

Mature gga-miR-96-5p

• Accession: MIMAT0037540
• Description: Gallus gallus gga-miR-96-5p mature miRNA
• Sequence: 9 - UUGGCACUAGCACAUUUUUGCU - 30
• Evidence: experimental ; Illumina [2]

Mature gga-miR-96-3p

• Accession: MIMAT0037541
• Description: Gallus gallus gga-miR-96-3p mature miRNA
• Sequence: 50 - CAAUUAUGUGUAGUGCCAAUAU - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973