Stem-loop bra-MIR9569

Accession

MI0029319

Description

Brassica rapa bra-MIR9569 precursor miRNA

Literature search

1 open access papers mention bra-MIR9569
(1 sentences)

Sequence

cuaucuccauuuuaucuuucauuucacucacaauaaaaucauauauugguuuugauaaaUGAGUUAUCAUUGGUCUUGUGucaagauauacauuguuccgguauaucucgACACAGGAACAAUACUAACUCAUUuaucaauaaaaauguaugauuuuauugaaagugaaaugaaagauauaaugggagacau
...((((((((.((((((((((((((((..(((((((((((((((((....(((((((((((((((..((((.(((((((((.((((((((.........)))))))).))))))))).))))..)))))))))))))))....)))))))))))))))))..)))))))))))))))).))).)))))...

Structure

cua     -   u                ca                 gguu               UC    G         a        auu 
   ucucc auu uaucuuucauuucacu  caauaaaaucauauauu    uugauaaaUGAGUUA  AUUG UCUUGUGuc agauauac   g
   ||||| ||| ||||||||||||||||  |||||||||||||||||    |||||||||||||||  |||| ||||||||| ||||||||   u
   agagg uaa auagaaaguaaaguga  guuauuuuaguauguaa    aacuauUUACUCAAU  UAAC AGGACACAg ucuauaug   u
uac     g   u                aa                 aaau               CA    A         c        gcc 

Annotation confidence Not enough data

Genome context

chrA3: 27699619-27699810 [-]

Mature bra-miR9569-5p

• Accession: MIMAT0035699
• Description: Brassica rapa bra-miR9569-5p mature miRNA
• Sequence: 60 - UGAGUUAUCAUUGGUCUUGUG - 80
• Evidence: experimental ; Illumina [1]

Mature bra-miR9569-3p

• Accession: MIMAT0035700
• Description: Brassica rapa bra-miR9569-3p mature miRNA
• Sequence: 111 - ACACAGGAACAAUACUAACUCAUU - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146