Stem-loop bra-MIR9567

Accession

MI0029316

Description

Brassica rapa bra-MIR9567 precursor miRNA

Literature search

1 open access papers mention bra-MIR9567
(1 sentences)

Sequence

auuaguuacgcaucUAAACAACACAUAUAGUUUGCaggguggauaaaacuggcauuauauguaacaagacgguagaacauauaaugcuaguuuguuccacccugcAAACUAUAUGUGUUGCUUAGAugcguaacuugg
...((((((((((((((.(((((((((((((((((((((((((..(((((((((((((((((.((......))...)))))))))))))))))..))))))))))))))))))))))))).))))))))))))))...

Structure

auu              A                         ua                 --a  aa 
   aguuacgcaucUAA CAACACAUAUAGUUUGCagggugga  aaacuggcauuauaugu   ac  g
   |||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||   ||   
   ucaaugcguAGAUU GUUGUGUAUAUCAAAcgucccaccu  uuugaucguaauauaca   ug  a
ggu              C                         ug                 aga  gc 

Annotation confidence Low

Genome context

chrA3: 17824435-17824572 [+]

Mature bra-miR9567-5p

• Accession: MIMAT0035693
• Description: Brassica rapa bra-miR9567-5p mature miRNA
• Sequence: 15 - UAAACAACACAUAUAGUUUGC - 35
• Evidence: experimental ; Illumina [1]

Mature bra-miR9567-3p

• Accession: MIMAT0035694
• Description: Brassica rapa bra-miR9567-3p mature miRNA
• Sequence: 106 - AAACUAUAUGUGUUGCUUAGA - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146