Stem-loop bra-MIR9564

Accession

MI0029313

Description

Brassica rapa bra-MIR9564 precursor miRNA

Sequence

uuuccgaaaacauuucggaaggauaaaacuuguucucccaaaaaaaccgcugaaaaaccccuacguuaaucgcggaaaaaggaaacacaACAAAACGAUUACACAGCUCGGUCgcuacguagcgacCGAGCUGUGUAAUCGUUUUGUUguguuuccuuuuuccgcgauuaacguagggguuuuucagcgguuuuuuugggagaacaaguuuuauccuuccgaaauguuuucgg
...(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

uuu                                                                                                                 a 
   ccgaaaacauuucggaaggauaaaacuuguucucccaaaaaaaccgcugaaaaaccccuacguuaaucgcggaaaaaggaaacacaACAAAACGAUUACACAGCUCGGUCgcu c
   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
   ggcuuuuguaaagccuuccuauuuugaacaagaggguuuuuuuggcgacuuuuuggggaugcaauuagcgccuuuuuccuuugugUUGUUUUGCUAAUGUGUCGAGCcagcga g
---                                                                                                                 u 

Annotation confidence Low

Genome context

chrA1: 24271248-24271480 [+]

Mature bra-miR9564-5p

• Accession: MIMAT0035687
• Description: Brassica rapa bra-miR9564-5p mature miRNA
• Sequence: 90 - ACAAAACGAUUACACAGCUCGGUC - 113
• Evidence: experimental ; Illumina [1]

Mature bra-miR9564-3p

• Accession: MIMAT0035688
• Description: Brassica rapa bra-miR9564-3p mature miRNA
• Sequence: 127 - CGAGCUGUGUAAUCGUUUUGUU - 148
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146