Stem-loop bra-MIR9553

Accession

MI0029299

Description

Brassica rapa bra-MIR9553 precursor miRNA

Literature search

1 open access papers mention bra-MIR9553
(1 sentences)

Sequence

ggggcaagagggcaaccaugUACAAAGCUGAAGCUAAUUAUGugaaguaugguaaucccauaauuagcuuauauuuugguauuggcuaagacuagaaucuaauauaugccugacuucacaUAAUCAGCUCCAGCUAUGUACAugguucccauucuaccacuuuguuuggcaucucucccgcuguguac
.(((..((((((.(((((((((((.(((((.((((.((((((((((((..((((.........((((((.((((....)))).)))))).................))))..)))))))))))).)))).))))).))))))))))))))......(((.......)))..)))..))).........

Structure

--------g   ca   ---------------------   c           A     A    A            au    --------aucccauaa      u    u 
         ggg  aga                     ggg aaccaugUACA AGCUG AGCU AUUAUGugaagu  ggua                 uuagcu auau u
         |||  |||                     ||| ||||||||||| ||||| |||| ||||||||||||  ||||                 |||||| ||||  
         ccc  ucu                     ccc uugguACAUGU UCGAC UCGA UAAUacacuuca  ccgu                 aaucgg uaug u
caugugucg   uc   acgguuuguuucaccaucuua   -           A     C    C            gu    auauaaucuaagaucag      u    g 

Annotation confidence Not enough data

Genome context

chrA1: 7994267-7994454 [+]

Mature bra-miR9553-5p

• Accession: MIMAT0035659
• Description: Brassica rapa bra-miR9553-5p mature miRNA
• Sequence: 21 - UACAAAGCUGAAGCUAAUUAUG - 42
• Evidence: experimental ; Illumina [1]

Mature bra-miR9553-3p

• Accession: MIMAT0035660
• Description: Brassica rapa bra-miR9553-3p mature miRNA
• Sequence: 121 - UAAUCAGCUCCAGCUAUGUACA - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146