Stem-loop sly-MIR9479

Accession

MI0029122

Description

Solanum lycopersicum sly-MIR9479 precursor miRNA

Literature search

2 open access papers mention sly-MIR9479
(3 sentences)

Sequence

gaggguuaguggcacgcgguuaguuuauaugaucgguuuauaacaagUCCAGUCCUCUACCCUUCUCCAcuuaaaagaccaagcuugucuacaacaagguuccaacucaugacaaacauaugaugugugaguuaggcacgugucacggguucaaaugcuaccaccgacaaaaguaugguauuuaagugGAGAAUGGUAGAGGGUCGGACCcauuaucuaccgaguuucauaccgugcaccacuagcccuc
((((((((((((..((((((........(((((((((..((((...((((.((((((((((.(((((((((((((..((((.(((((((.........(((..(((((.(((((.........(((((.......)))))))))).)))))..))).........))))..))).)))).))))))))))))).)))))))))).))))...))))..)))))...))))))))))..))))))))))))

Structure

            ca      uaguuuau    ---     uu    caa    A          C             ag    a   --    uacaacaag   cc     a     aacauauga     ga 
gaggguuagugg  cgcggu        auga   ucggu  auaa   gUCC GUCCUCUACC UUCUCCAcuuaaa  acca gcu  uguc         guu  aacuc ugaca         ugugu  g
||||||||||||  ||||||        ||||   |||||  ||||   |||| |||||||||| |||||||||||||  |||| |||  ||||         |||  ||||| |||||         |||||  u
cucccgaucacc  gugcca        uacu   agcca  uauu   CAGG UGGGAGAUGG AAGAGgugaauuu  uggu uga  acag         uaa  uuggg acugu         gcacg  u
            ac      --------    uug     uc    acC    C          U             -a    a   aa    ccaccaucg   ac     c     ---------     ga 

Annotation confidence Not enough data

Genome context

chr5: 65132400-65132649 [+]

Mature sly-miR9479-5p

• Accession: MIMAT0035477
• Description: Solanum lycopersicum sly-miR9479-5p mature miRNA
• Sequence: 48 - UCCAGUCCUCUACCCUUCUCCA - 69
• Evidence: experimental ; Illumina [1]

Mature sly-miR9479-3p

• Accession: MIMAT0035478
• Description: Solanum lycopersicum sly-miR9479-3p mature miRNA
• Sequence: 189 - GAGAAUGGUAGAGGGUCGGACC - 210
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739